1 dCache_1#1
52-274 aa · 223 aa · 38.0% of protein
Raw token
dCache_1:52:0.000000427:274:229:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS03885
Histidine kinase, Classic
Blautia celeris · GCF_014287615
ClassHKTypeClassicLength587 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS03885Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length587 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage474 / 587 aa (80.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa587 aa
Domain-by-domain annotation4 items
2 HAMP#2
295-362 aa · 68 aa · 11.6% of protein
Raw token
HAMP:295:0.0000000000189:362:68:693 His_kinase#3
377-455 aa · 79 aa · 13.5% of protein
Raw token
His_kinase:377:7.28e-31:455:80:804 HATPase_c#4
474-577 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:474:0.00000000000229:577:108:109- Raw architecture: dCache_1:52:0.000000427:274:229:195#HAMP:295:0.0000000000189:362:68:69#His_kinase:377:7.28e-31:455:80:80#HATPase_c:474:0.00000000000229:577:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span873460-876079Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_03885RefSeq proteinWP_103731335.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00025Context members
H8S76_RS03885H8S76_RS03890
Partner locus tags
H8S76_RS03885H8S76_RS03890
Partner old locus tags
H8S76_03885H8S76_03890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731335.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F844Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F844_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS03885Primary locus identifier stored in the genes table.
Old locus tagH8S76_03885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval873 460-875 223 nt1 764 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span873 460-876 079 ntGCF_014287615::NZ_JACOOU010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span873 460-876 079 nt2 620 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
873 460 nt876 079 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS03885GCF_014287615#H8S76_RS03885
HKClassicCurrent focus
873 460-875 223 nt · Reverse (-)
H8S76_RS03890GCF_014287615#H8S76_RS03890
RRunclassified
875 246-876 079 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS06340Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1127187
Simplified PFAM architecture for HKOC_1127187
PFAM domain coverage: 233 / 587 aa (39.7%)
1 aa587 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[312-361] | His_kinase[377-455] | HATPase_c[474-577]
- Domain count: 3
- Matched identifier: HKOC_1127187
- Positioned domains: HAMP 312-361 ; His_kinase 377-455 ; HATPase_c 474-577
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS06340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key