1 Response_reg#1
2-114 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:2:4.42e-27:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS03365
Response regulator OmpR family
Blautia celeris · GCF_014287615
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS03365Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 225 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:147:1.91e-31:220:77:77- Raw architecture: Response_reg:2:4.42e-27:114:113:111#Trans_reg_C:147:1.91e-31:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span751014-753349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_03365RefSeq proteinWP_033142724.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00022Context members
H8S76_RS03365H8S76_RS03370
Partner locus tags
H8S76_RS03365H8S76_RS03370
Partner old locus tags
H8S76_03365H8S76_03370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033142724.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DM80Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DM80_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS03365Primary locus identifier stored in the genes table.
Old locus tagH8S76_03365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval751 014-751 691 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span751 014-753 349 ntGCF_014287615::NZ_JACOOU010000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span751 014-753 349 nt2 336 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
751 014 nt753 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS03365GCF_014287615#H8S76_RS03365
RROmpRCurrent focus
751 014-751 691 nt · Forward (+)
H8S76_RS03370GCF_014287615#H8S76_RS03370
HKClassic
751 688-753 349 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS06905Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1480007
Simplified PFAM architecture for RROC_1480007
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1480007
- Positioned domains: Response_reg 2-114 ; Response_reg 2-114 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS06905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key