1 HAMP#1
301-379 aa · 79 aa · 13.0% of protein
Raw token
HAMP:301:0.000000112:379:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS03210
Histidine kinase, Classic
Blautia celeris · GCF_014287615
ClassHKTypeClassicLength608 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS03210Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length608 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 608 aa (42.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa608 aa
Domain-by-domain annotation3 items
2 His_kinase#2
394-473 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:394:6.93e-26:473:80:803 HATPase_c#3
493-594 aa · 102 aa · 16.8% of protein
Raw token
HATPase_c:493:0.00000000000111:594:104:109- Raw architecture: HAMP:301:0.000000112:379:79:69#His_kinase:394:6.93e-26:473:80:80#HATPase_c:493:0.00000000000111:594:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span720765-724167Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_03210RefSeq proteinWP_186970985.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00021Context members
H8S76_RS03210H8S76_RS03215
Partner locus tags
H8S76_RS03210H8S76_RS03215
Partner old locus tags
H8S76_03210H8S76_03215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186970985.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F7Q5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F7Q5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS03210Primary locus identifier stored in the genes table.
Old locus tagH8S76_03210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval720 765-722 591 nt1 827 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span720 765-724 167 ntGCF_014287615::NZ_JACOOU010000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span720 765-724 167 nt3 403 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
720 765 nt724 167 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS03210GCF_014287615#H8S76_RS03210
HKClassicCurrent focus
720 765-722 591 nt · Forward (+)
H8S76_RS03215GCF_014287615#H8S76_RS03215
RRunclassified
722 566-724 167 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287615#H8S76_RS03210The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1015397
Simplified PFAM architecture for HKOC_1015397
PFAM domain coverage: 181 / 608 aa (29.8%)
1 aa608 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[395-472] | HATPase_c[493-595]
- Domain count: 2
- Matched identifier: HKOC_1015397
- Positioned domains: His_kinase 395-472 ; HATPase_c 493-595
Cluster members and taxonomy
Representative gene: GCF_014287615#H8S76_RS03210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key