1 Response_reg#1
3-103 aa · 101 aa · 48.6% of protein
Raw token
Response_reg:3:3.18e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS03015
Response regulator NarL family
Blautia celeris · GCF_014287615
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS03015Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 208 aa (73.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-201 aa · 52 aa · 25.0% of protein
Raw token
HTH_LUXR:150:1.14e-19:201:52:58- Raw architecture: Response_reg:3:3.18e-26:103:101:111#HTH_LUXR:150:1.14e-19:201:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span684994-686716Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_03015RefSeq proteinWP_054350469.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00019Context members
H8S76_RS03010H8S76_RS03015
Partner locus tags
H8S76_RS03010H8S76_RS03015
Partner old locus tags
H8S76_03010H8S76_03015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054350469.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F7K7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F7K7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS03015Primary locus identifier stored in the genes table.
Old locus tagH8S76_03015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval686 090-686 716 nt627 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span684 994-686 716 ntGCF_014287615::NZ_JACOOU010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span684 994-686 716 nt1 723 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
684 994 nt686 716 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS03010GCF_014287615#H8S76_RS03010
HKClassic
684 994-686 079 nt · Forward (+)
H8S76_RS03015GCF_014287615#H8S76_RS03015
RRNarLCurrent focus
686 090-686 716 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287615#H8S76_RS03015The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2062978
Simplified PFAM architecture for RROC_2062978
PFAM domain coverage: 158 / 208 aa (76.0%)
1 aa208 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-108] | GerE[150-201]
- Domain count: 2
- Matched identifier: RROC_2062978
- Positioned domains: Response_reg 3-108 ; GerE 150-201
Cluster members and taxonomy
Representative gene: GCF_014287615#H8S76_RS03015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key