1 dCache_1#1
43-277 aa · 235 aa · 39.4% of protein
Raw token
dCache_1:43:0.000000000673:277:247:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS01845
Histidine kinase, Classic
Blautia celeris · GCF_014287615
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS01845Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage496 / 596 aa (83.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation4 items
2 HAMP#2
291-362 aa · 72 aa · 12.1% of protein
Raw token
HAMP:291:0.000000000403:362:73:693 His_kinase#3
380-458 aa · 79 aa · 13.3% of protein
Raw token
His_kinase:380:2.58e-31:458:79:804 HATPase_c#4
470-579 aa · 110 aa · 18.5% of protein
Raw token
HATPase_c:470:0.00000000000779:579:114:109- Raw architecture: dCache_1:43:0.000000000673:277:247:195#HAMP:291:0.000000000403:362:73:69#His_kinase:380:2.58e-31:458:79:80#HATPase_c:470:0.00000000000779:579:114:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span421846-425194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_01845RefSeq proteinWP_054350665.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00013Context members
H8S76_RS01840H8S76_RS01845
Partner locus tags
H8S76_RS01840H8S76_RS01845
Partner old locus tags
H8S76_01840H8S76_01845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054350665.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F6Z1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F6Z1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS01845Primary locus identifier stored in the genes table.
Old locus tagH8S76_01845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval423 404-425 194 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span421 846-425 194 ntGCF_014287615::NZ_JACOOU010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span421 846-425 194 nt3 349 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
421 846 nt425 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS01840GCF_014287615#H8S76_RS01840
RRunclassified
421 846-423 411 nt · Reverse (-)
H8S76_RS01845GCF_014287615#H8S76_RS01845
HKClassicCurrent focus
423 404-425 194 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS08215Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1075201
Simplified PFAM architecture for HKOC_1075201
PFAM domain coverage: 226 / 596 aa (37.9%)
1 aa596 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-362] | His_kinase[380-456] | HATPase_c[477-580]
- Domain count: 3
- Matched identifier: HKOC_1075201
- Positioned domains: HAMP 318-362 ; His_kinase 380-456 ; HATPase_c 477-580
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS08215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key