1 Response_reg#1
4-116 aa · 113 aa · 21.7% of protein
Raw token
Response_reg:4:2.43e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS01840
Response regulator, unclassified
Blautia celeris · GCF_014287615
ClassRRTypeunclassifiedLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS01840Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 521 aa (36.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
424-464 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:424:0.0000000434:464:41:423 HTH_AraC#3
477-514 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:477:0.000000152:514:38:42- Raw architecture: Response_reg:4:2.43e-26:116:113:111#HTH_AraC:424:0.0000000434:464:41:42#HTH_AraC:477:0.000000152:514:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span421846-425194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_01840RefSeq proteinWP_033139101.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00013Context members
H8S76_RS01840H8S76_RS01845
Partner locus tags
H8S76_RS01840H8S76_RS01845
Partner old locus tags
H8S76_01840H8S76_01845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033139101.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DSH2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DSH2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS01840Primary locus identifier stored in the genes table.
Old locus tagH8S76_01840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval421 846-423 411 nt1 566 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span421 846-425 194 ntGCF_014287615::NZ_JACOOU010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span421 846-425 194 nt3 349 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
421 846 nt425 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS01840GCF_014287615#H8S76_RS01840
RRunclassifiedCurrent focus
421 846-423 411 nt · Reverse (-)
H8S76_RS01845GCF_014287615#H8S76_RS01845
HKClassic
423 404-425 194 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS08210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0124755
Simplified PFAM architecture for RROC_0124755
PFAM domain coverage: 192 / 521 aa (36.9%)
1 aa521 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[437-515]
- Domain count: 2
- Matched identifier: RROC_0124755
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 437-515 ; HTH_18 437-515
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS08210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key