1 Response_reg#1
4-114 aa · 111 aa · 45.3% of protein
Raw token
Response_reg:4:0.000000000000132:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS01650
Response regulator LytTR family
Blautia celeris · GCF_014287615
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_014287615#H8S76_RS01650Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 245 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
151-245 aa · 95 aa · 38.8% of protein
Raw token
LytTR:151:3.28e-19:245:100:98- Raw architecture: Response_reg:4:0.000000000000132:114:111:111#LytTR:151:3.28e-19:245:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_014287615::NZ_JACOOU010000001.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span378651-379388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_01650RefSeq proteinWP_033139273.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00011Context members
H8S76_RS01650
Partner locus tags
H8S76_RS01650
Partner old locus tags
H8S76_01650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033139273.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DRA9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DRA9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS01650Primary locus identifier stored in the genes table.
Old locus tagH8S76_01650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval378 651-379 388 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span378 651-379 388 ntGCF_014287615::NZ_JACOOU010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span378 651-379 388 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
378 651 nt379 388 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H8S76_RS01650GCF_014287615#H8S76_RS01650
RRLytTRCurrent focus
378 651-379 388 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS08025Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0793538
Simplified PFAM architecture for RROC_0793538
PFAM domain coverage: 202 / 245 aa (82.4%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[152-240]
- Domain count: 2
- Matched identifier: RROC_0793538
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 152-240 ; LytTR 152-240
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS08025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key