1 KdpD#1
5-195 aa · 191 aa · 22.2% of protein
Raw token
KdpD:5:7.98e-81:195:211:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS01275
Histidine kinase, Classic
Blautia celeris · GCF_014287615
ClassHKTypeClassicLength859 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS01275Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length859 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage372 / 859 aa (43.3%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa859 aa
Domain-by-domain annotation3 items
2 HisKA#2
631-698 aa · 68 aa · 7.9% of protein
Raw token
HisKA:631:0.000000000000653:698:68:643 HATPase_c#3
742-854 aa · 113 aa · 13.2% of protein
Raw token
HATPase_c:742:9.41e-28:854:113:109- Raw architecture: KdpD:5:7.98e-81:195:211:210#HisKA:631:0.000000000000653:698:68:64#HATPase_c:742:9.41e-28:854:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span274944-278217Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_01275RefSeq proteinWP_103732522.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00006Context members
H8S76_RS01270H8S76_RS01275
Partner locus tags
H8S76_RS01270H8S76_RS01275
Partner old locus tags
H8S76_01270H8S76_01275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732522.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F6L8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F6L8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS01275Primary locus identifier stored in the genes table.
Old locus tagH8S76_01275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval275 638-278 217 nt2 580 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span274 944-278 217 ntGCF_014287615::NZ_JACOOU010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span274 944-278 217 nt3 274 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
274 944 nt278 217 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS01270GCF_014287615#H8S76_RS01270
RROmpR
274 944-275 645 nt · Reverse (-)
H8S76_RS01275GCF_014287615#H8S76_RS01275
HKClassicCurrent focus
275 638-278 217 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS07645Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0473375
Simplified PFAM architecture for HKOC_0473375
PFAM domain coverage: 475 / 859 aa (55.3%)
1 aa859 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[6-195] | DUF4118[364-469] | HisKA[631-698] | HATPase_c[743-853]
- Domain count: 4
- Matched identifier: HKOC_0473375
- Positioned domains: KdpD 6-195 ; DUF4118 364-469 ; HisKA 631-698 ; HATPase_c 743-853
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS07645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key