1 HAMP#1
176-239 aa · 64 aa · 13.5% of protein
Raw token
HAMP:176:0.0000000000012:239:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS00765
Histidine kinase, Classic
Blautia celeris · GCF_014287615
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS00765Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 473 aa (49.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-310 aa · 65 aa · 13.7% of protein
Raw token
HisKA:246:0.0000000000000433:310:65:643 HATPase_c#3
362-465 aa · 104 aa · 22.0% of protein
Raw token
HATPase_c:362:2.6e-28:465:104:109- Raw architecture: HAMP:176:0.0000000000012:239:68:69#HisKA:246:0.0000000000000433:310:65:64#HATPase_c:362:2.6e-28:465:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span165348-167470Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_00765RefSeq proteinWP_103732984.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00004Context members
H8S76_RS00760H8S76_RS00765
Partner locus tags
H8S76_RS00760H8S76_RS00765
Partner old locus tags
H8S76_00760H8S76_00765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732984.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DSC5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DSC5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS00765Primary locus identifier stored in the genes table.
Old locus tagH8S76_00765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval166 049-167 470 nt1 422 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span165 348-167 470 ntGCF_014287615::NZ_JACOOU010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span165 348-167 470 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 348 nt167 470 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS00760GCF_014287615#H8S76_RS00760
RROmpR
165 348-166 052 nt · Forward (+)
H8S76_RS00765GCF_014287615#H8S76_RS00765
HKClassicCurrent focus
166 049-167 470 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS12945Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1689253
Simplified PFAM architecture for HKOC_1689253
PFAM domain coverage: 216 / 473 aa (45.7%)
1 aa473 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-240] | HisKA[246-310] | HATPase_c[361-466]
- Domain count: 3
- Matched identifier: HKOC_1689253
- Positioned domains: HAMP 196-240 ; HisKA 246-310 ; HATPase_c 361-466
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS12945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key