1 Response_reg#1
6-115 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:6:1.35e-32:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYR00_RS15295
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_014131695
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_014131695#EYR00_RS15295Stable P2CS identifier used across views.
GenomeGCF_014131695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:149:7.3e-26:225:77:77- Raw architecture: Response_reg:6:1.35e-32:115:111:111#Trans_reg_C:149:7.3e-26:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_014131695::NZ_CP036346.1::G00026
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span3200963-3206537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYR00_15330RefSeq proteinWP_003535603.1
Context group ID
GCF_014131695::NZ_CP036346.1::G00026Context members
EYR00_RS15295EYR00_RS15300EYR00_RS15305EYR00_RS15310
Partner locus tags
EYR00_RS15295EYR00_RS15300EYR00_RS15305EYR00_RS15310
Partner old locus tags
EYR00_15330EYR00_15335EYR00_15340EYR00_15345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535603.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q3A813Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q3A813_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYR00_RS15295Primary locus identifier stored in the genes table.
Old locus tagEYR00_15330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036346.1Sequence record reported by the local genomic context database.
Genomic interval3 200 963-3 201 646 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 200 963-3 206 537 ntGCF_014131695::NZ_CP036346.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014131695::NZ_CP036346.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036346.1All displayed genes belong to this local TCS context.
Neighborhood span3 200 963-3 206 537 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 200 963 nt3 206 537 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
EYR00_RS15295GCF_014131695#EYR00_RS15295
RROmpRCurrent focus
3 200 963-3 201 646 nt · Reverse (-)
EYR00_RS15300GCF_014131695#EYR00_RS15300
HKClassic
3 201 639-3 203 099 nt · Reverse (-)
EYR00_RS15305GCF_014131695#EYR00_RS15305
RROmpR
3 203 144-3 203 854 nt · Reverse (-)
EYR00_RS15310GCF_014131695#EYR00_RS15310
HKClassic
3 203 847-3 206 537 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354482
Simplified PFAM architecture for RROC_1354482
PFAM domain coverage: 187 / 227 aa (82.4%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-225]
- Domain count: 2
- Matched identifier: RROC_1354482
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-225 ; Trans_reg_C 149-225
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_014131695
AssemblyASM1413169v1 · Complete Genomehaploid
Genome composition3 247 604 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key