1 Response_reg#1
3-112 aa · 110 aa · 50.7% of protein
Raw token
Response_reg:3:4.83e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYR00_RS01915
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_014131695
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014131695#EYR00_RS01915Stable P2CS identifier used across views.
GenomeGCF_014131695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 33.2% of protein
Raw token
Trans_reg_C:145:2.52e-31:216:77:77- Raw architecture: Response_reg:3:4.83e-36:112:111:111#Trans_reg_C:145:2.52e-31:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014131695::NZ_CP036346.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span412223-413925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYR00_01915RefSeq proteinWP_008792340.1
Context group ID
GCF_014131695::NZ_CP036346.1::G00006Context members
EYR00_RS01915EYR00_RS01920
Partner locus tags
EYR00_RS01915EYR00_RS01920
Partner old locus tags
EYR00_01915EYR00_01920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792340.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q7MLU6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q7MLU6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYR00_RS01915Primary locus identifier stored in the genes table.
Old locus tagEYR00_01915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036346.1Sequence record reported by the local genomic context database.
Genomic interval412 223-412 876 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span412 223-413 925 ntGCF_014131695::NZ_CP036346.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014131695::NZ_CP036346.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036346.1All displayed genes belong to this local TCS context.
Neighborhood span412 223-413 925 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
412 223 nt413 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EYR00_RS01915GCF_014131695#EYR00_RS01915
RROmpRCurrent focus
412 223-412 876 nt · Forward (+)
EYR00_RS01920GCF_014131695#EYR00_RS01920
HKClassic
412 873-413 925 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS14255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847663
Simplified PFAM architecture for RROC_1847663
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1847663
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS14255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_014131695
AssemblyASM1413169v1 · Complete Genomehaploid
Genome composition3 247 604 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key