1 HAMP#1
280-357 aa · 78 aa · 13.3% of protein
Raw token
HAMP:280:0.000000002:357:78:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4987_RS13230
Histidine kinase, Classic
Agathobacter rectalis · GCF_013303945
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303945#G4987_RS13230Stable P2CS identifier used across views.
GenomeGCF_013303945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 586 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-451 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:372:7.63e-23:451:80:803 HATPase_c#3
471-573 aa · 103 aa · 17.6% of protein
Raw token
HATPase_c:471:0.00000000000344:573:104:109- Raw architecture: HAMP:280:0.000000002:357:78:69#His_kinase:372:7.63e-23:451:80:80#HATPase_c:471:0.00000000000344:573:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303945::NZ_JAAISC010000037.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12721-16060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4987_13250RefSeq proteinWP_173849627.1
Context group ID
GCF_013303945::NZ_JAAISC010000037.1::G00028Context members
G4987_RS13230G4987_RS13235
Partner locus tags
G4987_RS13230G4987_RS13235
Partner old locus tags
G4987_13250G4987_13255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173849627.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WT22Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WT22_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4987_RS13230Primary locus identifier stored in the genes table.
Old locus tagG4987_13250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISC010000037.1Sequence record reported by the local genomic context database.
Genomic interval12 721-14 481 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 721-16 060 ntGCF_013303945::NZ_JAAISC010000037.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303945::NZ_JAAISC010000037.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISC010000037.1All displayed genes belong to this local TCS context.
Neighborhood span12 721-16 060 nt3 340 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 721 nt16 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4987_RS13230GCF_013303945#G4987_RS13230
HKClassicCurrent focus
12 721-14 481 nt · Forward (+)
G4987_RS13235GCF_013303945#G4987_RS13235
RRunclassified
14 468-16 060 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS13780Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1133076
Simplified PFAM architecture for HKOC_1133076
PFAM domain coverage: 181 / 586 aa (30.9%)
1 aa586 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[373-450] | HATPase_c[471-573]
- Domain count: 2
- Matched identifier: HKOC_1133076
- Positioned domains: His_kinase 373-450 ; HATPase_c 471-573
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS13780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303945
AssemblyASM1330394v1 · Contighaploid
Genome composition3 575 657 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 86 · HK 35 · RR 48CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key