1 Response_reg#1
3-113 aa · 111 aa · 47.2% of protein
Raw token
Response_reg:3:1.76e-18:113:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4987_RS08875
Response regulator LytTR family
Agathobacter rectalis · GCF_013303945
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013303945#G4987_RS08875Stable P2CS identifier used across views.
GenomeGCF_013303945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 235 aa (86.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
135-226 aa · 92 aa · 39.1% of protein
Raw token
LytTR:135:1.9e-17:226:97:98- Raw architecture: Response_reg:3:1.76e-18:113:115:111#LytTR:135:1.9e-17:226:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013303945::NZ_JAAISC010000016.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7720-8427Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4987_08860RefSeq proteinWP_173849090.1
Context group ID
GCF_013303945::NZ_JAAISC010000016.1::G00006Context members
G4987_RS08875
Partner locus tags
G4987_RS08875
Partner old locus tags
G4987_08860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173849090.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WK11Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WK11_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4987_RS08875Primary locus identifier stored in the genes table.
Old locus tagG4987_08860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISC010000016.1Sequence record reported by the local genomic context database.
Genomic interval7 720-8 427 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 720-8 427 ntGCF_013303945::NZ_JAAISC010000016.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303945::NZ_JAAISC010000016.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISC010000016.1All displayed genes belong to this local TCS context.
Neighborhood span7 720-8 427 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 720 nt8 427 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4987_RS08875GCF_013303945#G4987_RS08875
RRLytTRCurrent focus
7 720-8 427 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS06595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1028319
Simplified PFAM architecture for RROC_1028319
PFAM domain coverage: 202 / 235 aa (86.0%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1028319
- Positioned domains: Response_reg 3-115 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS06595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303945
AssemblyASM1330394v1 · Contighaploid
Genome composition3 575 657 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 86 · HK 35 · RR 48CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key