1 HAMP#1
183-253 aa · 71 aa · 14.2% of protein
Raw token
HAMP:183:0.00000000000000515:253:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4987_RS04270
Histidine kinase, Classic
Agathobacter rectalis · GCF_013303945
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303945#G4987_RS04270Stable P2CS identifier used across views.
GenomeGCF_013303945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 499 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation3 items
2 HisKA#2
268-331 aa · 64 aa · 12.8% of protein
Raw token
HisKA:268:0.0000000000000156:331:64:643 HATPase_c#3
378-491 aa · 114 aa · 22.8% of protein
Raw token
HATPase_c:378:5.56e-32:491:114:109- Raw architecture: HAMP:183:0.00000000000000515:253:71:69#HisKA:268:0.0000000000000156:331:64:64#HATPase_c:378:5.56e-32:491:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303945::NZ_JAAISC010000005.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11774-14086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4987_04295RefSeq proteinWP_173848927.1
Context group ID
GCF_013303945::NZ_JAAISC010000005.1::G00041Context members
G4987_RS04265G4987_RS04270
Partner locus tags
G4987_RS04265G4987_RS04270
Partner old locus tags
G4987_04290G4987_04295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848927.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WR46Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WR46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4987_RS04270Primary locus identifier stored in the genes table.
Old locus tagG4987_04295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISC010000005.1Sequence record reported by the local genomic context database.
Genomic interval12 587-14 086 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 774-14 086 ntGCF_013303945::NZ_JAAISC010000005.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303945::NZ_JAAISC010000005.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span11 774-14 086 nt2 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 774 nt14 086 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4987_RS04265GCF_013303945#G4987_RS04265
RROmpR
11 774-12 463 nt · Forward (+)
G4987_RS04270GCF_013303945#G4987_RS04270
HKClassicCurrent focus
12 587-14 086 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS04265Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1483233
Simplified PFAM architecture for HKOC_1483233
PFAM domain coverage: 228 / 499 aa (45.7%)
1 aa499 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[266-330] | HATPase_c[379-488]
- Domain count: 3
- Matched identifier: HKOC_1483233
- Positioned domains: HAMP 200-252 ; HisKA 266-330 ; HATPase_c 379-488
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS04265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303945
AssemblyASM1330394v1 · Contighaploid
Genome composition3 575 657 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 86 · HK 35 · RR 48CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key