1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:2.26e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A10_RS09485
Response regulator OmpR family
Agathobacter rectalis · GCF_013303905
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303905#G5A10_RS09485Stable P2CS identifier used across views.
GenomeGCF_013303905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:2.14e-31:226:77:77- Raw architecture: Response_reg:4:2.26e-36:113:111:111#Trans_reg_C:150:2.14e-31:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303905::NZ_JAAISG010000017.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45166-48336Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A10_09475RefSeq proteinWP_012743710.1
Context group ID
GCF_013303905::NZ_JAAISG010000017.1::G00007Context members
G5A10_RS09485G5A10_RS09490
Partner locus tags
G5A10_RS09485G5A10_RS09490
Partner old locus tags
G5A10_09475G5A10_09480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743710.1Primary protein accession used for annex mappings.
UniProt accessionC4ZI46Primary UniProt accession resolved in the annex database.
UniProt IDC4ZI46_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A10_RS09485Primary locus identifier stored in the genes table.
Old locus tagG5A10_09475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISG010000017.1Sequence record reported by the local genomic context database.
Genomic interval45 166-45 855 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 166-48 336 ntGCF_013303905::NZ_JAAISG010000017.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303905::NZ_JAAISG010000017.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISG010000017.1All displayed genes belong to this local TCS context.
Neighborhood span45 166-48 336 nt3 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 166 nt48 336 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A10_RS09485GCF_013303905#G5A10_RS09485
RROmpRCurrent focus
45 166-45 855 nt · Forward (+)
G5A10_RS09490GCF_013303905#G5A10_RS09490
HKClassic
45 913-48 336 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS13280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246430
Simplified PFAM architecture for RROC_1246430
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1246430
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS13280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303905
AssemblyASM1330390v1 · Contighaploid
Genome composition3 574 933 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 36 · RR 48CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key