1 HisKA#1
235-300 aa · 66 aa · 14.4% of protein
Raw token
HisKA:235:0.00000000000000882:300:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A10_RS09210
Histidine kinase, Classic
Agathobacter rectalis · GCF_013303905
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303905#G5A10_RS09210Stable P2CS identifier used across views.
GenomeGCF_013303905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 457 aa (35.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
346-441 aa · 96 aa · 21.0% of protein
Raw token
HATPase_c:346:0.00000000000028:441:100:109- Raw architecture: HisKA:235:0.00000000000000882:300:66:64#HATPase_c:346:0.00000000000028:441:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303905::NZ_JAAISG010000016.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54763-56825Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A10_09200RefSeq proteinWP_055237928.1
Context group ID
GCF_013303905::NZ_JAAISG010000016.1::G00006Context members
G5A10_RS09210G5A10_RS09215
Partner locus tags
G5A10_RS09210G5A10_RS09215
Partner old locus tags
G5A10_09200G5A10_09205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055237928.1Primary protein accession used for annex mappings.
UniProt accessionA0A173T7E7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173T7E7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A10_RS09210Primary locus identifier stored in the genes table.
Old locus tagG5A10_09200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISG010000016.1Sequence record reported by the local genomic context database.
Genomic interval54 763-56 136 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 763-56 825 ntGCF_013303905::NZ_JAAISG010000016.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303905::NZ_JAAISG010000016.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISG010000016.1All displayed genes belong to this local TCS context.
Neighborhood span54 763-56 825 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 763 nt56 825 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A10_RS09210GCF_013303905#G5A10_RS09210
HKClassicCurrent focus
54 763-56 136 nt · Reverse (-)
G5A10_RS09215GCF_013303905#G5A10_RS09215
RROmpR
56 133-56 825 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS07125Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1875210
Simplified PFAM architecture for HKOC_1875210
PFAM domain coverage: 161 / 457 aa (35.2%)
1 aa457 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-300] | HATPase_c[347-441]
- Domain count: 2
- Matched identifier: HKOC_1875210
- Positioned domains: HisKA 235-300 ; HATPase_c 347-441
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS07125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303905
AssemblyASM1330390v1 · Contighaploid
Genome composition3 574 933 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 36 · RR 48CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key