1 HAMP#1
42-112 aa · 71 aa · 21.2% of protein
Raw token
HAMP:42:0.00000000000313:112:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A10_RS08820
Histidine kinase, Classic
Agathobacter rectalis · GCF_013303905
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303905#G5A10_RS08820Stable P2CS identifier used across views.
GenomeGCF_013303905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 335 aa (73.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation3 items
2 HisKA#2
119-181 aa · 63 aa · 18.8% of protein
Raw token
HisKA:119:0.00000000000000374:181:63:643 HATPase_c#3
225-335 aa · 111 aa · 33.1% of protein
Raw token
HATPase_c:225:7.91e-29:335:111:109- Raw architecture: HAMP:42:0.00000000000313:112:71:69#HisKA:119:0.00000000000000374:181:63:64#HATPase_c:225:7.91e-29:335:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303905::NZ_JAAISG010000015.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51956-53657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A10_08810RefSeq proteinWP_173849232.1
Context group ID
GCF_013303905::NZ_JAAISG010000015.1::G00004Context members
G5A10_RS08820G5A10_RS08825
Partner locus tags
G5A10_RS08820G5A10_RS08825
Partner old locus tags
G5A10_08810G5A10_08815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173849232.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WNF3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WNF3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A10_RS08820Primary locus identifier stored in the genes table.
Old locus tagG5A10_08810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISG010000015.1Sequence record reported by the local genomic context database.
Genomic interval51 956-52 963 nt1 008 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 956-53 657 ntGCF_013303905::NZ_JAAISG010000015.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303905::NZ_JAAISG010000015.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISG010000015.1All displayed genes belong to this local TCS context.
Neighborhood span51 956-53 657 nt1 702 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 956 nt53 657 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A10_RS08820GCF_013303905#G5A10_RS08820
HKClassicCurrent focus
51 956-52 963 nt · Reverse (-)
G5A10_RS08825GCF_013303905#G5A10_RS08825
RROmpR
52 986-53 657 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS08810Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2848741
Simplified PFAM architecture for HKOC_2848741
PFAM domain coverage: 224 / 335 aa (66.9%)
1 aa335 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[60-112] | HisKA[118-180] | HATPase_c[227-334]
- Domain count: 3
- Matched identifier: HKOC_2848741
- Positioned domains: HAMP 60-112 ; HisKA 118-180 ; HATPase_c 227-334
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS08810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303905
AssemblyASM1330390v1 · Contighaploid
Genome composition3 574 933 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 36 · RR 48CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key