1 HAMP#1
179-246 aa · 68 aa · 14.2% of protein
Raw token
HAMP:179:0.000000000000193:246:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A43_RS06460
Histidine kinase, Classic
Agathobacter rectalis · GCF_013303875
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303875#G5A43_RS06460Stable P2CS identifier used across views.
GenomeGCF_013303875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 479 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-312 aa · 60 aa · 12.5% of protein
Raw token
HisKA:253:5.32e-16:312:60:643 HATPase_c#3
364-474 aa · 111 aa · 23.2% of protein
Raw token
HATPase_c:364:3.4e-32:474:111:109- Raw architecture: HAMP:179:0.000000000000193:246:68:69#HisKA:253:5.32e-16:312:60:64#HATPase_c:364:3.4e-32:474:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303875::NZ_JAAISF010000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24171-26315Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A43_06475RefSeq proteinWP_154267342.1
Context group ID
GCF_013303875::NZ_JAAISF010000010.1::G00001Context members
G5A43_RS06460G5A43_RS06465
Partner locus tags
G5A43_RS06460G5A43_RS06465
Partner old locus tags
G5A43_06475G5A43_06480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154267342.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L5TC34Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L5TC34_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A43_RS06460Primary locus identifier stored in the genes table.
Old locus tagG5A43_06475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISF010000010.1Sequence record reported by the local genomic context database.
Genomic interval24 171-25 610 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 171-26 315 ntGCF_013303875::NZ_JAAISF010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303875::NZ_JAAISF010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISF010000010.1All displayed genes belong to this local TCS context.
Neighborhood span24 171-26 315 nt2 145 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 171 nt26 315 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A43_RS06460GCF_013303875#G5A43_RS06460
HKClassicCurrent focus
24 171-25 610 nt · Reverse (-)
G5A43_RS06465GCF_013303875#G5A43_RS06465
RROmpR
25 614-26 315 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009680195#GKE07_RS12430Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1630872
Simplified PFAM architecture for HKOC_1630872
PFAM domain coverage: 224 / 479 aa (46.8%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-247] | HisKA[253-314] | HATPase_c[365-475]
- Domain count: 3
- Matched identifier: HKOC_1630872
- Positioned domains: HAMP 197-247 ; HisKA 253-314 ; HATPase_c 365-475
Cluster members and taxonomy
Representative gene: GCF_009680195#GKE07_RS12430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303875
AssemblyASM1330387v1 · Contighaploid
Genome composition3 586 927 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 36 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key