1 HAMP#1
264-331 aa · 68 aa · 12.2% of protein
Raw token
HAMP:264:0.0000000000914:331:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A43_RS03720
Histidine kinase, Classic
Agathobacter rectalis · GCF_013303875
ClassHKTypeClassicLength557 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303875#G5A43_RS03720Stable P2CS identifier used across views.
GenomeGCF_013303875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length557 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 557 aa (46.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa557 aa
Domain-by-domain annotation3 items
2 His_kinase#2
348-427 aa · 80 aa · 14.4% of protein
Raw token
His_kinase:348:1.79e-27:427:80:803 HATPase_c#3
443-552 aa · 110 aa · 19.7% of protein
Raw token
HATPase_c:443:0.000000000000103:552:111:109- Raw architecture: HAMP:264:0.0000000000914:331:68:69#His_kinase:348:1.79e-27:427:80:80#HATPase_c:443:0.000000000000103:552:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303875::NZ_JAAISF010000004.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139018-142293Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A43_03735RefSeq proteinWP_173848913.1
Context group ID
GCF_013303875::NZ_JAAISF010000004.1::G00038Context members
G5A43_RS03720G5A43_RS03725
Partner locus tags
G5A43_RS03720G5A43_RS03725
Partner old locus tags
G5A43_03735G5A43_03740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848913.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WK94Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WK94_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A43_RS03720Primary locus identifier stored in the genes table.
Old locus tagG5A43_03735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISF010000004.1Sequence record reported by the local genomic context database.
Genomic interval139 018-140 691 nt1 674 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 018-142 293 ntGCF_013303875::NZ_JAAISF010000004.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303875::NZ_JAAISF010000004.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISF010000004.1All displayed genes belong to this local TCS context.
Neighborhood span139 018-142 293 nt3 276 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 018 nt142 293 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A43_RS03720GCF_013303875#G5A43_RS03720
HKClassicCurrent focus
139 018-140 691 nt · Forward (+)
G5A43_RS03725GCF_013303875#G5A43_RS03725
RRunclassified
140 716-142 293 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS04195Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1269561
Simplified PFAM architecture for HKOC_1269561
PFAM domain coverage: 235 / 557 aa (42.2%)
1 aa557 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[285-331] | His_kinase[349-427] | HATPase_c[443-551]
- Domain count: 3
- Matched identifier: HKOC_1269561
- Positioned domains: HAMP 285-331 ; His_kinase 349-427 ; HATPase_c 443-551
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS04195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303875
AssemblyASM1330387v1 · Contighaploid
Genome composition3 586 927 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 36 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key