1 HAMP#1
150-221 aa · 72 aa · 15.8% of protein
Raw token
HAMP:150:0.00000108:221:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A17_RS08480
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303705
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303705#G5A17_RS08480Stable P2CS identifier used across views.
GenomeGCF_013303705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 456 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-289 aa · 58 aa · 12.7% of protein
Raw token
HisKA:232:0.000000153:289:59:643 HATPase_c#3
343-450 aa · 108 aa · 23.7% of protein
Raw token
HATPase_c:343:2.53e-16:450:108:109- Raw architecture: HAMP:150:0.00000108:221:72:69#HisKA:232:0.000000153:289:59:64#HATPase_c:343:2.53e-16:450:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303705::NZ_JAAIRW010000012.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75185-77205Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A17_08480RefSeq proteinWP_101870491.1
Context group ID
GCF_013303705::NZ_JAAIRW010000012.1::G00006Context members
G5A17_RS08480G5A17_RS08485
Partner locus tags
G5A17_RS08480G5A17_RS08485
Partner old locus tags
G5A17_08480G5A17_08485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101870491.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PCY1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PCY1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A17_RS08480Primary locus identifier stored in the genes table.
Old locus tagG5A17_08480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRW010000012.1Sequence record reported by the local genomic context database.
Genomic interval75 185-76 555 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 185-77 205 ntGCF_013303705::NZ_JAAIRW010000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303705::NZ_JAAIRW010000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRW010000012.1All displayed genes belong to this local TCS context.
Neighborhood span75 185-77 205 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 185 nt77 205 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A17_RS08480GCF_013303705#G5A17_RS08480
HKClassicCurrent focus
75 185-76 555 nt · Reverse (-)
G5A17_RS08485GCF_013303705#G5A17_RS08485
RROmpR
76 546-77 205 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865325#CDL26_RS06760Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1890182
Simplified PFAM architecture for HKOC_1890182
PFAM domain coverage: 160 / 456 aa (35.1%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-285] | HATPase_c[344-450]
- Domain count: 2
- Matched identifier: HKOC_1890182
- Positioned domains: HisKA 233-285 ; HATPase_c 344-450
Cluster members and taxonomy
Representative gene: GCF_002865325#CDL26_RS06760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303705
AssemblyASM1330370v1 · Contighaploid
Genome composition3 654 944 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key