1 HisKA#1
73-138 aa · 66 aa · 22.6% of protein
Raw token
HisKA:73:0.00000000000000329:138:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A17_RS07575
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303705
ClassHKTypeClassicLength292 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013303705#G5A17_RS07575Stable P2CS identifier used across views.
GenomeGCF_013303705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length292 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 292 aa (56.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa292 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-287 aa · 100 aa · 34.2% of protein
Raw token
HATPase_c:188:0.0000000000000118:287:104:109- Raw architecture: HisKA:73:0.00000000000000329:138:66:64#HATPase_c:188:0.0000000000000118:287:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013303705::NZ_JAAIRW010000010.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span66318-67196Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A17_07580RefSeq proteinWP_008977169.1
Context group ID
GCF_013303705::NZ_JAAIRW010000010.1::G00003Context members
G5A17_RS07575
Partner locus tags
G5A17_RS07575
Partner old locus tags
G5A17_07580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008977169.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3FG80Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3FG80_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A17_RS07575Primary locus identifier stored in the genes table.
Old locus tagG5A17_07580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRW010000010.1Sequence record reported by the local genomic context database.
Genomic interval66 318-67 196 nt879 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 318-67 196 ntGCF_013303705::NZ_JAAIRW010000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303705::NZ_JAAIRW010000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRW010000010.1All displayed genes belong to this local TCS context.
Neighborhood span66 318-67 196 nt879 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 318 nt67 196 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A17_RS07575GCF_013303705#G5A17_RS07575
HKClassicCurrent focus
66 318-67 196 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299785#G4415_RS14430Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2894312
Simplified PFAM architecture for HKOC_2894312
PFAM domain coverage: 162 / 292 aa (55.5%)
1 aa292 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[74-137] | HATPase_c[187-284]
- Domain count: 2
- Matched identifier: HKOC_2894312
- Positioned domains: HisKA 74-137 ; HATPase_c 187-284
Cluster members and taxonomy
Representative gene: GCF_013299785#G4415_RS14430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303705
AssemblyASM1330370v1 · Contighaploid
Genome composition3 654 944 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key