1 Response_reg#1
4-113 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:4:1.55e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4993_RS17585
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_013303695
ClassRRTypeunclassifiedLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013303695#G4993_RS17585Stable P2CS identifier used across views.
GenomeGCF_013303695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 236 aa (46.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.55e-30:113:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013303695::NZ_JAAIRV010000078.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3381-4091Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4993_17570RefSeq proteinWP_226981623.1
Context group ID
GCF_013303695::NZ_JAAIRV010000078.1::G00007Context members
G4993_RS17585
Partner locus tags
G4993_RS17585
Partner old locus tags
G4993_17570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226981623.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4993_RS17585Primary locus identifier stored in the genes table.
Old locus tagG4993_17570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRV010000078.1Sequence record reported by the local genomic context database.
Genomic interval3 381-4 091 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 381-4 091 ntGCF_013303695::NZ_JAAIRV010000078.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303695::NZ_JAAIRV010000078.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRV010000078.1All displayed genes belong to this local TCS context.
Neighborhood span3 381-4 091 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 381 nt4 091 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4993_RS17585GCF_013303695#G4993_RS17585
RRunclassifiedCurrent focus
3 381-4 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS11165Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0994392
Simplified PFAM architecture for RROC_0994392
PFAM domain coverage: 110 / 236 aa (46.6%)
1 aa236 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-113]
- Domain count: 1
- Matched identifier: RROC_0994392
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS11165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303695
AssemblyASM1330369v1 · Contighaploid
Genome composition3 704 051 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key