1 HAMP#1
288-357 aa · 70 aa · 12.0% of protein
Raw token
HAMP:288:0.00000000212:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4983_RS12215
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303675
ClassHKTypeClassicLength583 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303675#G4983_RS12215Stable P2CS identifier used across views.
GenomeGCF_013303675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length583 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 583 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa583 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-452 aa · 81 aa · 13.9% of protein
Raw token
His_kinase:372:3.78e-22:452:81:803 HATPase_c#3
475-575 aa · 101 aa · 17.3% of protein
Raw token
HATPase_c:475:0.000000000000116:575:105:109- Raw architecture: HAMP:288:0.00000000212:357:70:69#His_kinase:372:3.78e-22:452:81:80#HATPase_c:475:0.000000000000116:575:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303675::NZ_JAAIRT010000023.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35300-38109Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4983_12220RefSeq proteinWP_004844762.1
Context group ID
GCF_013303675::NZ_JAAIRT010000023.1::G00023Context members
G4983_RS12215G4983_RS12220
Partner locus tags
G4983_RS12215G4983_RS12220
Partner old locus tags
G4983_12220G4983_12225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844762.1Primary protein accession used for annex mappings.
UniProt accessionA7B8B0Primary UniProt accession resolved in the annex database.
UniProt IDA7B8B0_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4983_RS12215Primary locus identifier stored in the genes table.
Old locus tagG4983_12220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRT010000023.1Sequence record reported by the local genomic context database.
Genomic interval35 300-37 051 nt1 752 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 300-38 109 ntGCF_013303675::NZ_JAAIRT010000023.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303675::NZ_JAAIRT010000023.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRT010000023.1All displayed genes belong to this local TCS context.
Neighborhood span35 300-38 109 nt2 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 300 nt38 109 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4983_RS12215GCF_013303675#G4983_RS12215
HKClassicCurrent focus
35 300-37 051 nt · Forward (+)
G4983_RS12220GCF_013303675#G4983_RS12220
RRunclassified
37 039-38 109 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS16720Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1147261
Simplified PFAM architecture for HKOC_1147261
PFAM domain coverage: 183 / 583 aa (31.4%)
1 aa583 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[372-451] | HATPase_c[472-574]
- Domain count: 2
- Matched identifier: HKOC_1147261
- Positioned domains: His_kinase 372-451 ; HATPase_c 472-574
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS16720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303675
AssemblyASM1330367v1 · Contighaploid
Genome composition3 655 100 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key