1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:3.17e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4962_RS04335
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_013303605
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013303605#G4962_RS04335Stable P2CS identifier used across views.
GenomeGCF_013303605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 224 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-215 aa · 71 aa · 31.7% of protein
Raw token
Trans_reg_C:145:2.17e-26:215:76:77- Raw architecture: Response_reg:4:3.17e-24:113:111:111#Trans_reg_C:145:2.17e-26:215:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013303605::NZ_JAAIRQ010000005.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21170-21844Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4962_04335RefSeq proteinWP_005333533.1
Context group ID
GCF_013303605::NZ_JAAIRQ010000005.1::G00045Context members
G4962_RS04335
Partner locus tags
G4962_RS04335
Partner old locus tags
G4962_04335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333533.1Primary protein accession used for annex mappings.
UniProt accessionV8C7X8Primary UniProt accession resolved in the annex database.
UniProt IDV8C7X8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4962_RS04335Primary locus identifier stored in the genes table.
Old locus tagG4962_04335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval21 170-21 844 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 170-21 844 ntGCF_013303605::NZ_JAAIRQ010000005.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303605::NZ_JAAIRQ010000005.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span21 170-21 844 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 170 nt21 844 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4962_RS04335GCF_013303605#G4962_RS04335
RROmpRCurrent focus
21 170-21 844 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS09015Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529304
Simplified PFAM architecture for RROC_1529304
PFAM domain coverage: 180 / 224 aa (80.4%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1529304
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS09015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303605
AssemblyASM1330360v1 · Contighaploid
Genome composition3 654 883 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key