1 Response_reg#1
4-109 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:4:4.24e-29:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4985_RS18395
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_013303585
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013303585#G4985_RS18395Stable P2CS identifier used across views.
GenomeGCF_013303585Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-218 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:143:1.48e-25:218:77:77- Raw architecture: Response_reg:4:4.24e-29:109:110:111#Trans_reg_C:143:1.48e-25:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013303585::NZ_JAAIRN010000066.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3143-3805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4985_18375RefSeq proteinWP_005337964.1
Context group ID
GCF_013303585::NZ_JAAIRN010000066.1::G00049Context members
G4985_RS18395
Partner locus tags
G4985_RS18395
Partner old locus tags
G4985_18375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005337964.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1B0A4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1B0A4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4985_RS18395Primary locus identifier stored in the genes table.
Old locus tagG4985_18375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRN010000066.1Sequence record reported by the local genomic context database.
Genomic interval3 143-3 805 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 143-3 805 ntGCF_013303585::NZ_JAAIRN010000066.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303585::NZ_JAAIRN010000066.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRN010000066.1All displayed genes belong to this local TCS context.
Neighborhood span3 143-3 805 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 143 nt3 805 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4985_RS18395GCF_013303585#G4985_RS18395
RROmpRCurrent focus
3 143-3 805 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS18110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1737470
Simplified PFAM architecture for RROC_1737470
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1737470
- Positioned domains: Response_reg 4-109 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS18110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303585
AssemblyASM1330358v1 · Contighaploid
Genome composition3 824 022 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key