1 HisKA#1
286-353 aa · 68 aa · 13.2% of protein
Raw token
HisKA:286:0.00000000000149:353:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4985_RS04325
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303585
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303585#G4985_RS04325Stable P2CS identifier used across views.
GenomeGCF_013303585Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 514 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
397-509 aa · 113 aa · 22.0% of protein
Raw token
HATPase_c:397:9.69e-29:509:113:109- Raw architecture: HisKA:286:0.00000000000149:353:68:64#HATPase_c:397:9.69e-29:509:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303585::NZ_JAAIRN010000006.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71047-73288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4985_04340RefSeq proteinWP_101878297.1
Context group ID
GCF_013303585::NZ_JAAIRN010000006.1::G00053Context members
G4985_RS04320G4985_RS04325
Partner locus tags
G4985_RS04320G4985_RS04325
Partner old locus tags
G4985_04335G4985_04340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101878297.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NU79Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NU79_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4985_RS04325Primary locus identifier stored in the genes table.
Old locus tagG4985_04340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRN010000006.1Sequence record reported by the local genomic context database.
Genomic interval71 744-73 288 nt1 545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 047-73 288 ntGCF_013303585::NZ_JAAIRN010000006.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303585::NZ_JAAIRN010000006.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span71 047-73 288 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 047 nt73 288 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4985_RS04320GCF_013303585#G4985_RS04320
RROmpR
71 047-71 751 nt · Reverse (-)
G4985_RS04325GCF_013303585#G4985_RS04325
HKClassicCurrent focus
71 744-73 288 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865405#CDL27_RS04305Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1411935
Simplified PFAM architecture for HKOC_1411935
PFAM domain coverage: 286 / 514 aa (55.6%)
1 aa514 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[17-123] | HisKA[286-353] | HATPase_c[398-508]
- Domain count: 3
- Matched identifier: HKOC_1411935
- Positioned domains: DUF4118 17-123 ; HisKA 286-353 ; HATPase_c 398-508
Cluster members and taxonomy
Representative gene: GCF_002865405#CDL27_RS04305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303585
AssemblyASM1330358v1 · Contighaploid
Genome composition3 824 022 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key