1 Response_reg#1
7-119 aa · 113 aa · 21.8% of protein
Raw token
Response_reg:7:8.82e-22:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4985_RS03710
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_013303585
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303585#G4985_RS03710Stable P2CS identifier used across views.
GenomeGCF_013303585Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 519 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-464 aa · 40 aa · 7.7% of protein
Raw token
HTH_AraC:425:0.0000000074:464:40:423 HTH_AraC#3
477-512 aa · 36 aa · 6.9% of protein
Raw token
HTH_AraC:477:0.000000167:512:36:42- Raw architecture: Response_reg:7:8.82e-22:119:113:111#HTH_AraC:425:0.0000000074:464:40:42#HTH_AraC:477:0.000000167:512:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303585::NZ_JAAIRN010000005.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54958-58213Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4985_03720RefSeq proteinWP_173878722.1
Context group ID
GCF_013303585::NZ_JAAIRN010000005.1::G00043Context members
G4985_RS03710G4985_RS19930
Partner locus tags
G4985_RS03710G4985_RS19930
Partner old locus tags
G4985_03720G4985_03725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173878722.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3F7U1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3F7U1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4985_RS03710Primary locus identifier stored in the genes table.
Old locus tagG4985_03720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRN010000005.1Sequence record reported by the local genomic context database.
Genomic interval54 958-56 517 nt1 560 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 958-58 213 ntGCF_013303585::NZ_JAAIRN010000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303585::NZ_JAAIRN010000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRN010000005.1All displayed genes belong to this local TCS context.
Neighborhood span54 958-58 213 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 958 nt58 213 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4985_RS03710GCF_013303585#G4985_RS03710
RRunclassifiedCurrent focus
54 958-56 517 nt · Reverse (-)
G4985_RS19930GCF_013303585#G4985_RS19930
HKClassic
56 483-58 213 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471005#DW270_RS13565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127725
Simplified PFAM architecture for RROC_0127725
PFAM domain coverage: 192 / 519 aa (37.0%)
1 aa519 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-119] | HTH_18[436-514]
- Domain count: 2
- Matched identifier: RROC_0127725
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; HTH_18 436-514 ; HTH_18 436-514
Cluster members and taxonomy
Representative gene: GCF_003471005#DW270_RS13565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303585
AssemblyASM1330358v1 · Contighaploid
Genome composition3 824 022 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key