1 Response_reg#1
2-114 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:2:1.47e-29:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4979_RS07405
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_013303535
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303535#G4979_RS07405Stable P2CS identifier used across views.
GenomeGCF_013303535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:147:6.81e-35:220:77:77- Raw architecture: Response_reg:2:1.47e-29:114:113:111#Trans_reg_C:147:6.81e-35:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303535::NZ_JAAIRL010000012.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6982-8980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4979_07415RefSeq proteinWP_004841680.1
Context group ID
GCF_013303535::NZ_JAAIRL010000012.1::G00004Context members
G4979_RS07400G4979_RS07405
Partner locus tags
G4979_RS07400G4979_RS07405
Partner old locus tags
G4979_07410G4979_07415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841680.1Primary protein accession used for annex mappings.
UniProt accessionA7B0M1Primary UniProt accession resolved in the annex database.
UniProt IDA7B0M1_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4979_RS07405Primary locus identifier stored in the genes table.
Old locus tagG4979_07415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRL010000012.1Sequence record reported by the local genomic context database.
Genomic interval8 300-8 980 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 982-8 980 ntGCF_013303535::NZ_JAAIRL010000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303535::NZ_JAAIRL010000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRL010000012.1All displayed genes belong to this local TCS context.
Neighborhood span6 982-8 980 nt1 999 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 982 nt8 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4979_RS07400GCF_013303535#G4979_RS07400
HKClassic
6 982-8 310 nt · Reverse (-)
G4979_RS07405GCF_013303535#G4979_RS07405
RROmpRCurrent focus
8 300-8 980 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS04820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408645
Simplified PFAM architecture for RROC_1408645
PFAM domain coverage: 186 / 226 aa (82.3%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1408645
- Positioned domains: Response_reg 2-114 ; Response_reg 2-114 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS04820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303535
AssemblyASM1330353v1 · Contighaploid
Genome composition3 822 653 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key