1 HAMP#1
166-233 aa · 68 aa · 14.7% of protein
Raw token
HAMP:166:0.0000000000528:233:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4977_RS00825
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303495
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303495#G4977_RS00825Stable P2CS identifier used across views.
GenomeGCF_013303495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 463 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-302 aa · 66 aa · 14.3% of protein
Raw token
HisKA:237:0.000000000000124:302:66:643 HATPase_c#3
350-460 aa · 111 aa · 24.0% of protein
Raw token
HATPase_c:350:8.29e-33:460:111:109- Raw architecture: HAMP:166:0.0000000000528:233:68:69#HisKA:237:0.000000000000124:302:66:64#HATPase_c:350:8.29e-33:460:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303495::NZ_JAAIRJ010000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span186484-188602Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4977_00830RefSeq proteinWP_024852604.1
Context group ID
GCF_013303495::NZ_JAAIRJ010000001.1::G00019Context members
G4977_RS00820G4977_RS00825
Partner locus tags
G4977_RS00820G4977_RS00825
Partner old locus tags
G4977_00825G4977_00830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_024852604.1Primary protein accession used for annex mappings.
UniProt accessionA0A414UUX1Primary UniProt accession resolved in the annex database.
UniProt IDA0A414UUX1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4977_RS00825Primary locus identifier stored in the genes table.
Old locus tagG4977_00830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval187 211-188 602 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span186 484-188 602 ntGCF_013303495::NZ_JAAIRJ010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303495::NZ_JAAIRJ010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span186 484-188 602 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 484 nt188 602 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4977_RS00820GCF_013303495#G4977_RS00820
RROmpR
186 484-187 173 nt · Forward (+)
G4977_RS00825GCF_013303495#G4977_RS00825
HKClassicCurrent focus
187 211-188 602 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000526735#N769_RS0102440Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1796060
Simplified PFAM architecture for HKOC_1796060
PFAM domain coverage: 229 / 463 aa (49.5%)
1 aa463 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[238-302] | HATPase_c[350-460]
- Domain count: 3
- Matched identifier: HKOC_1796060
- Positioned domains: HAMP 181-233 ; HisKA 238-302 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_000526735#N769_RS0102440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303495
AssemblyASM1330349v1 · Contighaploid
Genome composition3 848 809 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 107 · HK 52 · RR 54CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key