1 Response_reg#1
5-113 aa · 109 aa · 20.8% of protein
Raw token
Response_reg:5:7.97e-28:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4978_RS06970
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_013303465
ClassRRTypeunclassifiedLength525 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303465#G4978_RS06970Stable P2CS identifier used across views.
GenomeGCF_013303465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length525 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 525 aa (28.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa525 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
470-507 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:470:0.00000902:507:38:42- Raw architecture: Response_reg:5:7.97e-28:113:109:111#HTH_AraC:470:0.00000902:507:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303465::NZ_JAAIRI010000009.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20534-23877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4978_06945RefSeq proteinWP_118315611.1
Context group ID
GCF_013303465::NZ_JAAIRI010000009.1::G00061Context members
G4978_RS06970G4978_RS06975
Partner locus tags
G4978_RS06970G4978_RS06975
Partner old locus tags
G4978_06945G4978_06950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118315611.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4UQ28Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4UQ28_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4978_RS06970Primary locus identifier stored in the genes table.
Old locus tagG4978_06945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRI010000009.1Sequence record reported by the local genomic context database.
Genomic interval20 534-22 111 nt1 578 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 534-23 877 ntGCF_013303465::NZ_JAAIRI010000009.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303465::NZ_JAAIRI010000009.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRI010000009.1All displayed genes belong to this local TCS context.
Neighborhood span20 534-23 877 nt3 344 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 534 nt23 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4978_RS06970GCF_013303465#G4978_RS06970
RRunclassifiedCurrent focus
20 534-22 111 nt · Reverse (-)
G4978_RS06975GCF_013303465#G4978_RS06975
HKClassic
22 138-23 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473045#DW153_RS05675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0119324
Simplified PFAM architecture for RROC_0119324
PFAM domain coverage: 189 / 525 aa (36.0%)
1 aa525 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[431-508]
- Domain count: 2
- Matched identifier: RROC_0119324
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 431-508 ; HTH_18 431-508
Cluster members and taxonomy
Representative gene: GCF_003473045#DW153_RS05675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303465
AssemblyASM1330346v1 · Contighaploid
Genome composition3 848 275 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 107 · HK 52 · RR 54CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key