1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:3.43e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4978_RS06940
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_013303465
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303465#G4978_RS06940Stable P2CS identifier used across views.
GenomeGCF_013303465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:1.7e-31:220:77:77- Raw architecture: Response_reg:3:3.43e-38:113:111:111#Trans_reg_C:145:1.7e-31:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303465::NZ_JAAIRI010000009.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10609-12653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4978_06915RefSeq proteinWP_118315616.1
Context group ID
GCF_013303465::NZ_JAAIRI010000009.1::G00060Context members
G4978_RS06935G4978_RS06940
Partner locus tags
G4978_RS06935G4978_RS06940
Partner old locus tags
G4978_06910G4978_06915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118315616.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3H546Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3H546_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4978_RS06940Primary locus identifier stored in the genes table.
Old locus tagG4978_06915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRI010000009.1Sequence record reported by the local genomic context database.
Genomic interval11 979-12 653 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 609-12 653 ntGCF_013303465::NZ_JAAIRI010000009.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303465::NZ_JAAIRI010000009.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRI010000009.1All displayed genes belong to this local TCS context.
Neighborhood span10 609-12 653 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 609 nt12 653 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4978_RS06935GCF_013303465#G4978_RS06935
HKClassic
10 609-11 982 nt · Reverse (-)
G4978_RS06940GCF_013303465#G4978_RS06940
RROmpRCurrent focus
11 979-12 653 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473045#DW153_RS05705Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543429
Simplified PFAM architecture for RROC_1543429
PFAM domain coverage: 187 / 224 aa (83.5%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1543429
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_003473045#DW153_RS05705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303465
AssemblyASM1330346v1 · Contighaploid
Genome composition3 848 275 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 107 · HK 52 · RR 54CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key