1 HAMP#1
144-213 aa · 70 aa · 15.3% of protein
Raw token
HAMP:144:0.0000000000198:213:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4973_RS00815
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303425
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303425#G4973_RS00815Stable P2CS identifier used across views.
GenomeGCF_013303425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 457 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-302 aa · 65 aa · 14.2% of protein
Raw token
HisKA:238:0.000000000148:302:65:643 HATPase_c#3
348-451 aa · 104 aa · 22.8% of protein
Raw token
HATPase_c:348:3.32e-18:451:109:109- Raw architecture: HAMP:144:0.0000000000198:213:70:69#HisKA:238:0.000000000148:302:65:64#HATPase_c:348:3.32e-18:451:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303425::NZ_JAAIRG010000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span171451-173479Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4973_00810RefSeq proteinWP_009243777.1
Context group ID
GCF_013303425::NZ_JAAIRG010000001.1::G00018Context members
G4973_RS00810G4973_RS00815
Partner locus tags
G4973_RS00810G4973_RS00815
Partner old locus tags
G4973_00805G4973_00810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243777.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NW67Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NW67_MEDG5Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4973_RS00815Primary locus identifier stored in the genes table.
Old locus tagG4973_00810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRG010000001.1Sequence record reported by the local genomic context database.
Genomic interval172 106-173 479 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span171 451-173 479 ntGCF_013303425::NZ_JAAIRG010000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303425::NZ_JAAIRG010000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span171 451-173 479 nt2 029 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
171 451 nt173 479 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4973_RS00810GCF_013303425#G4973_RS00810
RROmpR
171 451-172 122 nt · Forward (+)
G4973_RS00815GCF_013303425#G4973_RS00815
HKClassicCurrent focus
172 106-173 479 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS02010Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1874327
Simplified PFAM architecture for HKOC_1874327
PFAM domain coverage: 216 / 457 aa (47.3%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-212] | HisKA[239-302] | HATPase_c[349-450]
- Domain count: 3
- Matched identifier: HKOC_1874327
- Positioned domains: HAMP 163-212 ; HisKA 239-302 ; HATPase_c 349-450
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS02010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303425
AssemblyASM1330342v1 · Contighaploid
Genome composition3 829 335 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key