1 Response_reg#1
6-115 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:6:6.99e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4976_RS02395
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_013303395
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303395#G4976_RS02395Stable P2CS identifier used across views.
GenomeGCF_013303395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:2.63e-26:229:77:77- Raw architecture: Response_reg:6:6.99e-39:115:111:111#Trans_reg_C:153:2.63e-26:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303395::NZ_JAAIRF010000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139795-142036Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4976_02375RefSeq proteinWP_117636215.1
Context group ID
GCF_013303395::NZ_JAAIRF010000002.1::G00029Context members
G4976_RS02390G4976_RS02395
Partner locus tags
G4976_RS02390G4976_RS02395
Partner old locus tags
G4976_02370G4976_02375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117636215.1Primary protein accession used for annex mappings.
UniProt accessionA0A396G6V8Primary UniProt accession resolved in the annex database.
UniProt IDA0A396G6V8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4976_RS02395Primary locus identifier stored in the genes table.
Old locus tagG4976_02375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRF010000002.1Sequence record reported by the local genomic context database.
Genomic interval141 332-142 036 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 795-142 036 ntGCF_013303395::NZ_JAAIRF010000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303395::NZ_JAAIRF010000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRF010000002.1All displayed genes belong to this local TCS context.
Neighborhood span139 795-142 036 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 795 nt142 036 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4976_RS02390GCF_013303395#G4976_RS02390
HKClassic
139 795-141 339 nt · Forward (+)
G4976_RS02395GCF_013303395#G4976_RS02395
RROmpRCurrent focus
141 332-142 036 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436535#DXD36_RS01930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055491
Simplified PFAM architecture for RROC_1055491
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1055491
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_003436535#DXD36_RS01930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303395
AssemblyASM1330339v1 · Contighaploid
Genome composition3 849 706 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 107 · HK 52 · RR 54CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key