1 HisKA#1
88-153 aa · 66 aa · 21.2% of protein
Raw token
HisKA:88:0.00000036:153:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A13_RS07360
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303385
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303385#G5A13_RS07360Stable P2CS identifier used across views.
GenomeGCF_013303385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 312 aa (55.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-305 aa · 106 aa · 34.0% of protein
Raw token
HATPase_c:200:2.65e-21:305:107:109- Raw architecture: HisKA:88:0.00000036:153:66:64#HATPase_c:200:2.65e-21:305:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303385::NZ_JAAIRE010000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45764-47367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A13_07365RefSeq proteinWP_118048134.1
Context group ID
GCF_013303385::NZ_JAAIRE010000011.1::G00002Context members
G5A13_RS07355G5A13_RS07360
Partner locus tags
G5A13_RS07355G5A13_RS07360
Partner old locus tags
G5A13_07360G5A13_07365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118048134.1Primary protein accession used for annex mappings.
UniProt accessionA0A396GHM0Primary UniProt accession resolved in the annex database.
UniProt IDA0A396GHM0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A13_RS07360Primary locus identifier stored in the genes table.
Old locus tagG5A13_07365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRE010000011.1Sequence record reported by the local genomic context database.
Genomic interval46 429-47 367 nt939 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 764-47 367 ntGCF_013303385::NZ_JAAIRE010000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303385::NZ_JAAIRE010000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRE010000011.1All displayed genes belong to this local TCS context.
Neighborhood span45 764-47 367 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 764 nt47 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A13_RS07355GCF_013303385#G5A13_RS07355
RROmpR
45 764-46 432 nt · Forward (+)
G5A13_RS07360GCF_013303385#G5A13_RS07360
HKClassicCurrent focus
46 429-47 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003469585#DW722_RS06545Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875927
Simplified PFAM architecture for HKOC_2875927
PFAM domain coverage: 172 / 312 aa (55.1%)
1 aa312 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-153] | HATPase_c[200-305]
- Domain count: 2
- Matched identifier: HKOC_2875927
- Positioned domains: HisKA 88-153 ; HATPase_c 200-305
Cluster members and taxonomy
Representative gene: GCF_003469585#DW722_RS06545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303385
AssemblyASM1330338v1 · Contighaploid
Genome composition3 843 325 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key