1 Response_reg#1
3-119 aa · 117 aa · 35.0% of protein
Raw token
Response_reg:3:5.95e-30:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4954_RS08630
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_013303285
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303285#G4954_RS08630Stable P2CS identifier used across views.
GenomeGCF_013303285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 334 aa (57.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
238-277 aa · 40 aa · 12.0% of protein
Raw token
HTH_AraC:238:0.00000000337:277:40:423 HTH_AraC#3
294-329 aa · 36 aa · 10.8% of protein
Raw token
HTH_AraC:294:0.00000111:329:36:42- Raw architecture: Response_reg:3:5.95e-30:119:117:111#HTH_AraC:238:0.00000000337:277:40:42#HTH_AraC:294:0.00000111:329:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303285::NZ_JAAIQX010000016.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68616-71415Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4954_08610RefSeq proteinWP_173882598.1
Context group ID
GCF_013303285::NZ_JAAIQX010000016.1::G00011Context members
G4954_RS08630G4954_RS08635
Partner locus tags
G4954_RS08630G4954_RS08635
Partner old locus tags
G4954_08610G4954_08615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173882598.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4954_RS08630Primary locus identifier stored in the genes table.
Old locus tagG4954_08610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQX010000016.1Sequence record reported by the local genomic context database.
Genomic interval68 616-69 620 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span68 616-71 415 ntGCF_013303285::NZ_JAAIQX010000016.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303285::NZ_JAAIQX010000016.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQX010000016.1All displayed genes belong to this local TCS context.
Neighborhood span68 616-71 415 nt2 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 616 nt71 415 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4954_RS08630GCF_013303285#G4954_RS08630
RRunclassifiedCurrent focus
68 616-69 620 nt · Reverse (-)
G4954_RS08635GCF_013303285#G4954_RS08635
HKClassic
69 601-71 415 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS07980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0514042
Simplified PFAM architecture for RROC_0514042
PFAM domain coverage: 187 / 334 aa (56.0%)
1 aa334 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-111] | HTH_18[252-329]
- Domain count: 2
- Matched identifier: RROC_0514042
- Positioned domains: Response_reg 3-111 ; HTH_18 252-329
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS07980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303285
AssemblyASM1330328v1 · Contighaploid
Genome composition3 207 698 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 41 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key