1 HAMP#1
300-371 aa · 72 aa · 12.0% of protein
Raw token
HAMP:300:0.000000000164:371:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4988_RS04710
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013303245
ClassHKTypeClassicLength602 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013303245#G4988_RS04710Stable P2CS identifier used across views.
GenomeGCF_013303245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length602 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 602 aa (37.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa602 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-462 aa · 77 aa · 12.8% of protein
Raw token
His_kinase:386:3.12e-19:462:78:803 HATPase_c#3
518-592 aa · 75 aa · 12.5% of protein
Raw token
HATPase_c:518:0.000000761:592:75:109- Raw architecture: HAMP:300:0.000000000164:371:72:69#His_kinase:386:3.12e-19:462:78:80#HATPase_c:518:0.000000761:592:75:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013303245::NZ_JAAIRA010000006.1::G00052
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span77233-79041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4988_04705RefSeq proteinWP_173878733.1
Context group ID
GCF_013303245::NZ_JAAIRA010000006.1::G00052Context members
G4988_RS04710
Partner locus tags
G4988_RS04710
Partner old locus tags
G4988_04705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173878733.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AVZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AVZ4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4988_RS04710Primary locus identifier stored in the genes table.
Old locus tagG4988_04705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIRA010000006.1Sequence record reported by the local genomic context database.
Genomic interval77 233-79 041 nt1 809 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span77 233-79 041 ntGCF_013303245::NZ_JAAIRA010000006.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303245::NZ_JAAIRA010000006.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIRA010000006.1All displayed genes belong to this local TCS context.
Neighborhood span77 233-79 041 nt1 809 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 233 nt79 041 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4988_RS04710GCF_013303245#G4988_RS04710
HKClassicCurrent focus
77 233-79 041 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS04705Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1044137
Simplified PFAM architecture for HKOC_1044137
PFAM domain coverage: 123 / 602 aa (20.4%)
1 aa602 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[325-370] | His_kinase[386-462]
- Domain count: 2
- Matched identifier: HKOC_1044137
- Positioned domains: HAMP 325-370 ; His_kinase 386-462
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS04705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013303245
AssemblyASM1330324v1 · Contighaploid
Genome composition3 831 555 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key