1 Response_reg#1
1-56 aa · 56 aa · 30.9% of protein
Raw token
Response_reg:1:0.00000000000000112:56:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4951_RS10740
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_013302885
ClassRRTypeLytTRLength181 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302885#G4951_RS10740Stable P2CS identifier used across views.
GenomeGCF_013302885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length181 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 181 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa181 aa
Domain-by-domain annotation2 items
2 LytTR#2
85-171 aa · 87 aa · 48.1% of protein
Raw token
LytTR:85:2.7e-18:171:93:98- Raw architecture: Response_reg:1:0.00000000000000112:56:58:111#LytTR:85:2.7e-18:171:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302885::NZ_JAAIQW010000024.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45815-46360Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4951_10715RefSeq proteinWP_322088080.1
Context group ID
GCF_013302885::NZ_JAAIQW010000024.1::G00018Context members
G4951_RS10740
Partner locus tags
G4951_RS10740
Partner old locus tags
G4951_10715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_322088080.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4951_RS10740Primary locus identifier stored in the genes table.
Old locus tagG4951_10715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQW010000024.1Sequence record reported by the local genomic context database.
Genomic interval45 815-46 360 nt546 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 815-46 360 ntGCF_013302885::NZ_JAAIQW010000024.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302885::NZ_JAAIQW010000024.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQW010000024.1All displayed genes belong to this local TCS context.
Neighborhood span45 815-46 360 nt546 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 815 nt46 360 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4951_RS10740GCF_013302885#G4951_RS10740
RRLytTRCurrent focus
45 815-46 360 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS10740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2185016
Simplified PFAM architecture for RROC_2185016
PFAM domain coverage: 140 / 181 aa (77.3%)
1 aa181 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[1-56] | LytTR[89-172]
- Domain count: 2
- Matched identifier: RROC_2185016
- Positioned domains: Response_reg 1-56 ; LytTR 89-172
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS10740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013302885
AssemblyASM1330288v1 · Contighaploid
Genome composition3 205 952 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 41 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key