1 Response_reg#1
5-114 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:5:2.33e-24:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4938_RS11420
Response regulator OmpR family
Anaerostipes hadrus · GCF_013302815
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302815#G4938_RS11420Stable P2CS identifier used across views.
GenomeGCF_013302815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 222 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:147:3.69e-27:222:77:77- Raw architecture: Response_reg:5:2.33e-24:114:111:111#Trans_reg_C:147:3.69e-27:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302815::NZ_JAAIQS010000022.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23983-24651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4938_11420RefSeq proteinWP_055259541.1
Context group ID
GCF_013302815::NZ_JAAIQS010000022.1::G00009Context members
G4938_RS11420
Partner locus tags
G4938_RS11420
Partner old locus tags
G4938_11420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055259541.1Primary protein accession used for annex mappings.
UniProt accessionA0A173UBU3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173UBU3_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4938_RS11420Primary locus identifier stored in the genes table.
Old locus tagG4938_11420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQS010000022.1Sequence record reported by the local genomic context database.
Genomic interval23 983-24 651 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 983-24 651 ntGCF_013302815::NZ_JAAIQS010000022.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302815::NZ_JAAIQS010000022.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQS010000022.1All displayed genes belong to this local TCS context.
Neighborhood span23 983-24 651 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 983 nt24 651 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4938_RS11420GCF_013302815#G4938_RS11420
RROmpRCurrent focus
23 983-24 651 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405715#AQ989_RS13335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641696
Simplified PFAM architecture for RROC_1641696
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1641696
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_001405715#AQ989_RS13335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302815
AssemblyASM1330281v1 · Contighaploid
Genome composition3 143 481 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 48 · HK 24 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key