1 HisKA#1
235-296 aa · 62 aa · 13.7% of protein
Raw token
HisKA:235:0.0000000000000378:296:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4940_RS05130
Histidine kinase, Classic
Anaerostipes hadrus · GCF_013302755
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302755#G4940_RS05130Stable P2CS identifier used across views.
GenomeGCF_013302755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-453 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:345:6.38e-21:453:109:109- Raw architecture: HisKA:235:0.0000000000000378:296:62:64#HATPase_c:345:6.38e-21:453:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302755::NZ_JAAIQP010000007.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50040-52057Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4940_05125RefSeq proteinWP_173747684.1
Context group ID
GCF_013302755::NZ_JAAIQP010000007.1::G00024Context members
G4940_RS05130G4940_RS05135
Partner locus tags
G4940_RS05130G4940_RS05135
Partner old locus tags
G4940_05125G4940_05130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173747684.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4940_RS05130Primary locus identifier stored in the genes table.
Old locus tagG4940_05125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQP010000007.1Sequence record reported by the local genomic context database.
Genomic interval50 040-51 404 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 040-52 057 ntGCF_013302755::NZ_JAAIQP010000007.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302755::NZ_JAAIQP010000007.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQP010000007.1All displayed genes belong to this local TCS context.
Neighborhood span50 040-52 057 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 040 nt52 057 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4940_RS05130GCF_013302755#G4940_RS05130
HKClassicCurrent focus
50 040-51 404 nt · Reverse (-)
G4940_RS05135GCF_013302755#G4940_RS05135
RROmpR
51 395-52 057 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS13840Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1859634
Simplified PFAM architecture for HKOC_1859634
PFAM domain coverage: 171 / 458 aa (37.3%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-296] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1859634
- Positioned domains: HisKA 235-296 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS13840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302755
AssemblyASM1330275v1 · Contighaploid
Genome composition3 142 845 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 48 · HK 24 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key