1 Response_reg#1
5-107 aa · 103 aa · 43.3% of protein
Raw token
Response_reg:5:4.17e-16:107:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4925_RS10155
Response regulator LytTR family
Anaerostipes hadrus · GCF_013302665
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302665#G4925_RS10155Stable P2CS identifier used across views.
GenomeGCF_013302665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 238 aa (69.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-204 aa · 63 aa · 26.5% of protein
Raw token
LytTR:142:0.000000000000329:204:63:98- Raw architecture: Response_reg:5:4.17e-16:107:105:111#LytTR:142:0.000000000000329:204:63:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302665::NZ_JAAIQK010000028.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22095-22811Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4925_10190RefSeq proteinWP_008393263.1
Context group ID
GCF_013302665::NZ_JAAIQK010000028.1::G00013Context members
G4925_RS10155
Partner locus tags
G4925_RS10155
Partner old locus tags
G4925_10190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008393263.1Primary protein accession used for annex mappings.
UniProt accessionD4MW36Primary UniProt accession resolved in the annex database.
UniProt IDD4MW36_ANAHADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4925_RS10155Primary locus identifier stored in the genes table.
Old locus tagG4925_10190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQK010000028.1Sequence record reported by the local genomic context database.
Genomic interval22 095-22 811 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 095-22 811 ntGCF_013302665::NZ_JAAIQK010000028.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302665::NZ_JAAIQK010000028.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQK010000028.1All displayed genes belong to this local TCS context.
Neighborhood span22 095-22 811 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 095 nt22 811 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4925_RS10155GCF_013302665#G4925_RS10155
RRLytTRCurrent focus
22 095-22 811 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS13635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932874
Simplified PFAM architecture for RROC_0932874
PFAM domain coverage: 175 / 238 aa (73.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-203]
- Domain count: 2
- Matched identifier: RROC_0932874
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 141-203 ; LytTR 141-203
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS13635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302665
AssemblyASM1330266v1 · Contighaploid
Genome composition2 988 393 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key