1 GGDEF#1
198-345 aa · 148 aa · 14.1% of protein
Raw token
GGDEF:198:4.01e-22:345:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4944_RS01880
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_013302555
ClassHKTypeHybridLength1051 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302555#G4944_RS01880Stable P2CS identifier used across views.
GenomeGCF_013302555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1051 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage447 / 1051 aa (42.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1051 aa
Domain-by-domain annotation4 items
2 HisKA#2
672-738 aa · 67 aa · 6.4% of protein
Raw token
HisKA:672:0.00000000000000409:738:67:643 HATPase_c#3
789-904 aa · 116 aa · 11.0% of protein
Raw token
HATPase_c:789:2.03e-28:904:117:1094 Response_reg#4
928-1043 aa · 116 aa · 11.0% of protein
Raw token
Response_reg:928:2.79e-28:1043:116:111- Raw architecture: GGDEF:198:4.01e-22:345:157:160#HisKA:672:0.00000000000000409:738:67:64#HATPase_c:789:2.03e-28:904:117:109#Response_reg:928:2.79e-28:1043:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302555::NZ_JAAIQE010000003.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span59120-62275Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4944_01885RefSeq proteinWP_173725218.1
Context group ID
GCF_013302555::NZ_JAAIQE010000003.1::G00023Context members
G4944_RS01880
Partner locus tags
G4944_RS01880
Partner old locus tags
G4944_01885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173725218.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2HUS1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2HUS1_ANAHADisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4944_RS01880Primary locus identifier stored in the genes table.
Old locus tagG4944_01885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQE010000003.1Sequence record reported by the local genomic context database.
Genomic interval59 120-62 275 nt3 156 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 120-62 275 ntGCF_013302555::NZ_JAAIQE010000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302555::NZ_JAAIQE010000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQE010000003.1All displayed genes belong to this local TCS context.
Neighborhood span59 120-62 275 nt3 156 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 120 nt62 275 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4944_RS01880GCF_013302555#G4944_RS01880
HKHybridCurrent focus
59 120-62 275 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302455#G4934_RS04800Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0258886
Simplified PFAM architecture for HKOC_0258886
PFAM domain coverage: 446 / 1051 aa (42.4%)
1 aa1051 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[198-346] | HisKA[672-738] | HATPase_c[789-903] | Response_reg[928-1042]
- Domain count: 4
- Matched identifier: HKOC_0258886
- Positioned domains: GGDEF 198-346 ; HisKA 672-738 ; HATPase_c 789-903 ; Response_reg 928-1042
Cluster members and taxonomy
Representative gene: GCF_013302455#G4934_RS04800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302555
AssemblyASM1330255v1 · Contighaploid
Genome composition3 354 284 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 58 · HK 28 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key