1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.0000000933:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4949_RS01420
Histidine kinase, Classic
Anaerostipes hadrus · GCF_013302545
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302545#G4949_RS01420Stable P2CS identifier used across views.
GenomeGCF_013302545Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 343 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:2.01e-27:341:101:109- Raw architecture: HisKA:123:0.0000000933:189:67:64#HATPase_c:241:2.01e-27:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302545::NZ_JAAIQD010000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66016-67736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4949_01410RefSeq proteinWP_154253022.1
Context group ID
GCF_013302545::NZ_JAAIQD010000002.1::G00014Context members
G4949_RS01420G4949_RS01425
Partner locus tags
G4949_RS01420G4949_RS01425
Partner old locus tags
G4949_01410G4949_01415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154253022.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GT70Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GT70_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4949_RS01420Primary locus identifier stored in the genes table.
Old locus tagG4949_01410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQD010000002.1Sequence record reported by the local genomic context database.
Genomic interval66 016-67 047 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 016-67 736 ntGCF_013302545::NZ_JAAIQD010000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302545::NZ_JAAIQD010000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQD010000002.1All displayed genes belong to this local TCS context.
Neighborhood span66 016-67 736 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 016 nt67 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4949_RS01420GCF_013302545#G4949_RS01420
HKClassicCurrent focus
66 016-67 047 nt · Reverse (-)
G4949_RS01425GCF_013302545#G4949_RS01425
RROmpR
67 044-67 736 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679955#GKD79_RS16210Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2829296
Simplified PFAM architecture for HKOC_2829296
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2829296
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_009679955#GKD79_RS16210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302545
AssemblyASM1330254v1 · Contighaploid
Genome composition3 391 495 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 58 · HK 28 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key