1 dCache_1#1
146-278 aa · 133 aa · 21.9% of protein
Raw token
dCache_1:146:0.000000384:278:136:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS11675
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS11675Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage319 / 606 aa (52.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
393-478 aa · 86 aa · 14.2% of protein
Raw token
His_kinase:393:4.2e-22:478:86:803 HATPase_c#3
501-600 aa · 100 aa · 16.5% of protein
Raw token
HATPase_c:501:0.0000000123:600:104:109- Raw architecture: dCache_1:146:0.000000384:278:136:195#His_kinase:393:4.2e-22:478:86:80#HATPase_c:501:0.0000000123:600:104:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000039.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11318-14677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_11715RefSeq proteinWP_173721671.1
Context group ID
GCF_013302125::NZ_JAAIPO010000039.1::G00053Context members
G5A00_RS11670G5A00_RS11675
Partner locus tags
G5A00_RS11670G5A00_RS11675
Partner old locus tags
G5A00_11710G5A00_11715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721671.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS11675Primary locus identifier stored in the genes table.
Old locus tagG5A00_11715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000039.1Sequence record reported by the local genomic context database.
Genomic interval12 857-14 677 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 318-14 677 ntGCF_013302125::NZ_JAAIPO010000039.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000039.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000039.1All displayed genes belong to this local TCS context.
Neighborhood span11 318-14 677 nt3 360 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 318 nt14 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS11670GCF_013302125#G5A00_RS11670
RRunclassified
11 318-12 802 nt · Reverse (-)
G5A00_RS11675GCF_013302125#G5A00_RS11675
HKClassicCurrent focus
12 857-14 677 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS11675The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1025212
Simplified PFAM architecture for HKOC_1025212
PFAM domain coverage: 84 / 606 aa (13.9%)
1 aa606 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[394-477]
- Domain count: 1
- Matched identifier: HKOC_1025212
- Positioned domains: His_kinase 394-477
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS11675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key