1 His_kinase#1
404-483 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:404:5.81e-27:483:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS11390
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS11390Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 607 aa (29.3%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
503-600 aa · 98 aa · 16.1% of protein
Raw token
HATPase_c:503:0.000000000000316:600:107:109- Raw architecture: His_kinase:404:5.81e-27:483:80:80#HATPase_c:503:0.000000000000316:600:107:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000037.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26323-29702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_11425RefSeq proteinWP_173721647.1
Context group ID
GCF_013302125::NZ_JAAIPO010000037.1::G00052Context members
G5A00_RS11390G5A00_RS11395
Partner locus tags
G5A00_RS11390G5A00_RS11395
Partner old locus tags
G5A00_11425G5A00_11430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721647.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS11390Primary locus identifier stored in the genes table.
Old locus tagG5A00_11425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000037.1Sequence record reported by the local genomic context database.
Genomic interval26 323-28 146 nt1 824 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 323-29 702 ntGCF_013302125::NZ_JAAIPO010000037.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000037.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000037.1All displayed genes belong to this local TCS context.
Neighborhood span26 323-29 702 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 323 nt29 702 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS11390GCF_013302125#G5A00_RS11390
HKClassicCurrent focus
26 323-28 146 nt · Reverse (-)
G5A00_RS11395GCF_013302125#G5A00_RS11395
RRunclassified
28 149-29 702 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS11390The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1020446
Simplified PFAM architecture for HKOC_1020446
PFAM domain coverage: 177 / 607 aa (29.2%)
1 aa607 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[405-483] | HATPase_c[503-600]
- Domain count: 2
- Matched identifier: HKOC_1020446
- Positioned domains: His_kinase 405-483 ; HATPase_c 503-600
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS11390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key