1 CHASE#1
110-218 aa · 109 aa · 15.9% of protein
Raw token
CHASE:110:0.0000000000000287:218:118:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS10175
Histidine kinase, Hybrid
Blautia wexlerae · GCF_013302125
ClassHKTypeHybridLength686 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS10175Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length686 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage408 / 686 aa (59.5%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa686 aa
Domain-by-domain annotation4 items
2 HisKA#2
309-375 aa · 67 aa · 9.8% of protein
Raw token
HisKA:309:2.83e-17:375:67:643 HATPase_c#3
422-539 aa · 118 aa · 17.2% of protein
Raw token
HATPase_c:422:1.02e-30:539:118:1094 Response_reg#4
565-678 aa · 114 aa · 16.6% of protein
Raw token
Response_reg:565:3.05e-28:678:114:111- Raw architecture: CHASE:110:0.0000000000000287:218:118:183#HisKA:309:2.83e-17:375:67:64#HATPase_c:422:1.02e-30:539:118:109#Response_reg:565:3.05e-28:678:114:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000031.1::G00047
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span10244-15004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_10200RefSeq proteinWP_173700068.1
Context group ID
GCF_013302125::NZ_JAAIPO010000031.1::G00047Context members
G5A00_RS10170G5A00_RS10175
Partner locus tags
G5A00_RS10170G5A00_RS10175
Partner old locus tags
G5A00_10195G5A00_10200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173700068.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS10175Primary locus identifier stored in the genes table.
Old locus tagG5A00_10200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000031.1Sequence record reported by the local genomic context database.
Genomic interval12 944-15 004 nt2 061 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 244-15 004 ntGCF_013302125::NZ_JAAIPO010000031.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000031.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000031.1All displayed genes belong to this local TCS context.
Neighborhood span10 244-15 004 nt4 761 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 244 nt15 004 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS10170GCF_013302125#G5A00_RS10170
HKHybrid
10 244-12 907 nt · Forward (+)
G5A00_RS10175GCF_013302125#G5A00_RS10175
HKHybridCurrent focus
12 944-15 004 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302085#G5A06_RS17640Use this link to inspect the representative gene detail.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801848
Simplified PFAM architecture for HKOC_0801848
PFAM domain coverage: 401 / 686 aa (58.5%)
1 aa686 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[109-213] | HisKA[309-375] | HATPase_c[422-536] | Response_reg[565-678]
- Domain count: 4
- Matched identifier: HKOC_0801848
- Positioned domains: CHASE 109-213 ; HisKA 309-375 ; HATPase_c 422-536 ; Response_reg 565-678
Cluster members and taxonomy
Representative gene: GCF_013302085#G5A06_RS17640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key