1 HAMP#1
38-107 aa · 70 aa · 20.6% of protein
Raw token
HAMP:38:0.00000000544:107:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS08940
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS08940Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 339 aa (70.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation3 items
2 HisKA#2
124-187 aa · 64 aa · 18.9% of protein
Raw token
HisKA:124:0.000000765:187:64:643 HATPase_c#3
232-335 aa · 104 aa · 30.7% of protein
Raw token
HATPase_c:232:9.86e-19:335:107:109- Raw architecture: HAMP:38:0.00000000544:107:70:69#HisKA:124:0.000000765:187:64:64#HATPase_c:232:9.86e-19:335:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000026.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5385-7228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_08960RefSeq proteinWP_242833687.1
Context group ID
GCF_013302125::NZ_JAAIPO010000026.1::G00044Context members
G5A00_RS08935G5A00_RS08940
Partner locus tags
G5A00_RS08935G5A00_RS08940
Partner old locus tags
G5A00_08955G5A00_08960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242833687.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS08940Primary locus identifier stored in the genes table.
Old locus tagG5A00_08960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000026.1Sequence record reported by the local genomic context database.
Genomic interval6 209-7 228 nt1 020 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 385-7 228 ntGCF_013302125::NZ_JAAIPO010000026.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000026.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000026.1All displayed genes belong to this local TCS context.
Neighborhood span5 385-7 228 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 385 nt7 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS08935GCF_013302125#G5A00_RS08935
RROmpR
5 385-6 059 nt · Forward (+)
G5A00_RS08940GCF_013302125#G5A00_RS08940
HKClassicCurrent focus
6 209-7 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210655#RO1_RS13510Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503354
Simplified PFAM architecture for HKOC_2503354
PFAM domain coverage: 211 / 393 aa (53.7%)
1 aa393 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[117-160] | HisKA[178-241] | HATPase_c[287-389]
- Domain count: 3
- Matched identifier: HKOC_2503354
- Positioned domains: HAMP 117-160 ; HisKA 178-241 ; HATPase_c 287-389
Cluster members and taxonomy
Representative gene: GCF_000210655#RO1_RS13510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key