1 Response_reg#1
3-114 aa · 112 aa · 21.7% of protein
Raw token
Response_reg:3:1.41e-32:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS08640
Response regulator, unclassified
Blautia wexlerae · GCF_013302125
ClassRRTypeunclassifiedLength515 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302125#G5A00_RS08640Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 515 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
466-500 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:466:0.00000000236:500:35:42- Raw architecture: Response_reg:3:1.41e-32:114:112:111#HTH_AraC:466:0.00000000236:500:35:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302125::NZ_JAAIPO010000024.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45129-46676Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_08660RefSeq proteinWP_173721518.1
Context group ID
GCF_013302125::NZ_JAAIPO010000024.1::G00042Context members
G5A00_RS08640
Partner locus tags
G5A00_RS08640
Partner old locus tags
G5A00_08660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721518.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS08640Primary locus identifier stored in the genes table.
Old locus tagG5A00_08660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000024.1Sequence record reported by the local genomic context database.
Genomic interval45 129-46 676 nt1 548 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 129-46 676 ntGCF_013302125::NZ_JAAIPO010000024.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000024.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000024.1All displayed genes belong to this local TCS context.
Neighborhood span45 129-46 676 nt1 548 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 129 nt46 676 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A00_RS08640GCF_013302125#G5A00_RS08640
RRunclassifiedCurrent focus
45 129-46 676 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS08640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0136906
Simplified PFAM architecture for RROC_0136906
PFAM domain coverage: 188 / 515 aa (36.5%)
1 aa515 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-116] | HTH_18[427-500]
- Domain count: 2
- Matched identifier: RROC_0136906
- Positioned domains: Response_reg 3-116 ; HTH_18 427-500
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS08640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key