1 Response_reg#1
4-108 aa · 105 aa · 46.3% of protein
Raw token
Response_reg:4:5.79e-27:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS08305
Response regulator OmpR family
Blautia wexlerae · GCF_013302125
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS08305Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 227 aa (75.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-219 aa · 66 aa · 29.1% of protein
Raw token
Trans_reg_C:154:1.63e-23:219:71:77- Raw architecture: Response_reg:4:5.79e-27:108:106:111#Trans_reg_C:154:1.63e-23:219:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000023.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36483-38582Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_08325RefSeq proteinWP_173721482.1
Context group ID
GCF_013302125::NZ_JAAIPO010000023.1::G00041Context members
G5A00_RS08300G5A00_RS08305
Partner locus tags
G5A00_RS08300G5A00_RS08305
Partner old locus tags
G5A00_08320G5A00_08325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS08305Primary locus identifier stored in the genes table.
Old locus tagG5A00_08325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000023.1Sequence record reported by the local genomic context database.
Genomic interval37 899-38 582 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 483-38 582 ntGCF_013302125::NZ_JAAIPO010000023.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000023.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000023.1All displayed genes belong to this local TCS context.
Neighborhood span36 483-38 582 nt2 100 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 483 nt38 582 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS08300GCF_013302125#G5A00_RS08300
HKClassic
36 483-37 619 nt · Reverse (-)
G5A00_RS08305GCF_013302125#G5A00_RS08305
RROmpRCurrent focus
37 899-38 582 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS08305The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1373504
Simplified PFAM architecture for RROC_1373504
PFAM domain coverage: 176 / 227 aa (77.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[151-219]
- Domain count: 2
- Matched identifier: RROC_1373504
- Positioned domains: Response_reg 4-110 ; Trans_reg_C 151-219
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS08305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key