1 HAMP#1
192-255 aa · 64 aa · 12.7% of protein
Raw token
HAMP:192:0.0000133:255:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS08130
Histidine kinase, Classic
Blautia wexlerae · GCF_013302125
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS08130Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 505 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 His_kinase#2
295-371 aa · 77 aa · 15.2% of protein
Raw token
His_kinase:295:7.1e-28:371:77:803 HATPase_c#3
391-492 aa · 102 aa · 20.2% of protein
Raw token
HATPase_c:391:0.000000000000131:492:105:109- Raw architecture: HAMP:192:0.0000133:255:64:69#His_kinase:295:7.1e-28:371:77:80#HATPase_c:391:0.000000000000131:492:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000023.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1345-4063Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_08150RefSeq proteinWP_173721463.1
Context group ID
GCF_013302125::NZ_JAAIPO010000023.1::G00039Context members
G5A00_RS08125G5A00_RS08130
Partner locus tags
G5A00_RS08125G5A00_RS08130
Partner old locus tags
G5A00_08145G5A00_08150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721463.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS08130Primary locus identifier stored in the genes table.
Old locus tagG5A00_08150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000023.1Sequence record reported by the local genomic context database.
Genomic interval2 546-4 063 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 345-4 063 ntGCF_013302125::NZ_JAAIPO010000023.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000023.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000023.1All displayed genes belong to this local TCS context.
Neighborhood span1 345-4 063 nt2 719 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 345 nt4 063 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS08125GCF_013302125#G5A00_RS08125
RRunclassified
1 345-2 571 nt · Reverse (-)
G5A00_RS08130GCF_013302125#G5A00_RS08130
HKClassicCurrent focus
2 546-4 063 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS08130The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1450843
Simplified PFAM architecture for HKOC_1450843
PFAM domain coverage: 165 / 505 aa (32.7%)
1 aa505 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[294-371] | HATPase_c[390-476]
- Domain count: 2
- Matched identifier: HKOC_1450843
- Positioned domains: His_kinase 294-371 ; HATPase_c 390-476
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS08130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key