1 Response_reg#1
3-113 aa · 111 aa · 46.3% of protein
Raw token
Response_reg:3:5.46e-16:113:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS06165
Response regulator LytTR family
Blautia wexlerae · GCF_013302125
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302125#G5A00_RS06165Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 240 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-228 aa · 90 aa · 37.5% of protein
Raw token
LytTR:139:0.0000000102:228:95:98- Raw architecture: Response_reg:3:5.46e-16:113:114:111#LytTR:139:0.0000000102:228:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302125::NZ_JAAIPO010000015.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23720-24442Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_06185RefSeq proteinWP_008704705.1
Context group ID
GCF_013302125::NZ_JAAIPO010000015.1::G00027Context members
G5A00_RS06165
Partner locus tags
G5A00_RS06165
Partner old locus tags
G5A00_06185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008704705.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ATM6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ATM6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS06165Primary locus identifier stored in the genes table.
Old locus tagG5A00_06185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000015.1Sequence record reported by the local genomic context database.
Genomic interval23 720-24 442 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 720-24 442 ntGCF_013302125::NZ_JAAIPO010000015.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000015.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000015.1All displayed genes belong to this local TCS context.
Neighborhood span23 720-24 442 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 720 nt24 442 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A00_RS06165GCF_013302125#G5A00_RS06165
RRLytTRCurrent focus
23 720-24 442 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0100345Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0883479
Simplified PFAM architecture for RROC_0883479
PFAM domain coverage: 199 / 240 aa (82.9%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-115] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0883479
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0100345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key